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Taking the refund now might get tricky. Depends on your situation. If the refund results in net paid taxes that are at least as high as the previous year, then take the refund, bank it, earn interest, and sort it out later. If you take the refund, but that leaves you with minimal payment and the amendment shows you owe more, you could be hit with interest and penalties. Also, I had an amendment last year which resulted in a refund, after I'd paid extra. The amended return seemed to get lost, it took 6 months, lots of calls, and bringing in the taxpayer advocate to get it all rolling. However, because the delay was theirs, they paid me interest on the refund amount.
OTOH, leaving the refund on the table as an interest free loan is not good. If that is what you do, file the extension, but get it sorted out as quickly as possible.
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I would not have anyone adopt my mode of living...but I would have each one be very careful to find out and pursue his own way, and not his father's or his mother's or his neighbor's instead. Thoreau, Walden
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