I believe that the success rates shown include both historic bond and stock yield averages. However, IMHO, it appears that we'll never see really high bond yields again in our lifetime, given the Fed's manipulation of the $/interest rates, and the need for cheap $ to allow us to continue deficit spending. My theory is that the model over-accounts for the safety given by bonds, since the returns will never return to what they were. Just my theory.... Vanguard's 'balanced asset mix' chart shows bond returns from 1926-2012.
Those types of simulations, unless they're done with Monte Carlo, usually use the actual returns (or synthesized equivalents) of stocks and bonds in the exact sequence that they occurred in the past. There have been other periods of low bond returns, but like everything, they didn't last forever. Now a combination of low bond returns simultaneous with high stock valuations - not so sure there's a lot of precedence there. Good thing the future is unknowable.